Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs2017927 chr14:78301257 A/G 0.000167 119 24.17 46.43 38.33 KM Plot
THYM rs201839241 chr4:70043620 TA/T 7.82E-13 117 39.75 42.3 6 KM Plot
THYM rs201863054 chr4:70093370 G/A 6.0E-13 118 41.22 35 6 KM Plot
THYM rs201939143 chr4:76330681 A/G 6.46E-5 117 39.75 47.07 60.13 KM Plot
THYM rs202085128 chr4:120304290 GC/G 6.06E-5 114 38.23 45.87 25 KM Plot
THYM rs202165147 chr7:29729568 CACAT/C 5.82E-13 117 38.23 48.18 6 KM Plot
THYM rs202202767 chr9:97222888 G/GT 8.1E-5 119 40.67 44.3 17.03 KM Plot
THYM rs2028668 chr2:30751760 A/G 1.86E-8 117 36.4 50.1 33.13 KM Plot
THYM rs2036533 chr15:78781687 G/A 3.52E-5 118 42.82 46.6 26 KM Plot
THYM rs2052444 chr14:78312918 T/C 1.23E-5 119 22.5 50.1 37.63 KM Plot
THYM rs2061954 chr8:50130412 A/G 2.31E-10 119 46.27 50.1 25.83 KM Plot
THYM rs2063662 chr1:227385390 C/T 0.000123 119 19.63 37.13 42.82 KM Plot
THYM rs2063664 chr1:227385546 T/C 0.000151 118 19.63 37.13 42.73 KM Plot
THYM rs2063666 chr1:227436025 A/G 0.000123 119 42.82 37.13 19.63 KM Plot
THYM rs2063938 chr10:1545684 T/C 0.00015 119 39.5 44.38 25.83 KM Plot